#include <chain_view.hh>
Inherits ost::mol::ChainBase.
Definition at line 37 of file chain_view.hh.
| ChainView | ( | ) |
| ChainView | ( | ChainViewDataPtr | data, | |
| impl::ChainImplPtr | impl | |||
| ) |
| ChainView | ( | const EntityView & | entity, | |
| const ChainHandle & | chain | |||
| ) |
| AtomView AddAtom | ( | const AtomHandle & | atom_handle, | |
| ViewAddFlags | flags = 0 | |||
| ) |
Add atom to view.
If the atoms's residue has not been added to the view it will be added.
| atom_handle | The atom to add | |
| flags | Can be a ORed together combination of ViewAddFlag |
| ResidueView AddResidue | ( | const ResidueView & | residue_view, | |
| ViewAddFlags | flags = 0 | |||
| ) |
Add residue to view.
This method is identical to AddResidue(const ResidueHandle&) except that in case ViewAddFlag::INCLUDE_ATOMS is set only the atoms included in the residue view are considered.
If ViewAddFlag::CHECK_DUPLICATES is set, the method will ensure that the view is not already included in the view.
| residue_view | The residue view to add | |
| flags | Can be a ORed together combination of ViewAddFlag. Flags that do not affect the operation are silently ignored. |
| ResidueView AddResidue | ( | const ResidueHandle & | residue_handle, | |
| ViewAddFlags | flags = 0 | |||
| ) |
Add residue to view.
If ViewAddFlag::CHECK_DUPLICATES is set, the method will ensure that the handle is not already included in the view.
| residue_handle | The residue handle to add | |
| flags | Can be a ORed together combination of ViewAddFlag. Flags that do not affect the operation are silently ignored. |
| void Apply | ( | EntityViewVisitor & | visitor | ) |
| void Apply | ( | EntityVisitor & | visitor | ) |
| AtomView FindAtom | ( | const AtomHandle & | atom | ) | const |
Find view for given atom handle.
| ResidueView FindResidue | ( | const ResidueHandle & | handle | ) | const |
Find residue by residue handle.
| ResidueView FindResidue | ( | const ResNum & | number | ) | const |
Find residue by number.
| int GetAtomCount | ( | ) | const |
Get number of atoms in this chain view.
| geom::Vec3 GetCenterOfAtoms | ( | ) | const |
Get entity's center of atoms (not mass weighted).
Returns the center of all the atoms in an entity. This is similar to GetCenterOfMass(), but the atoms are not mass weighted
| geom::Vec3 GetCenterOfMass | ( | ) | const |
Get entity's center of mass (mass weighted).
| EntityView GetEntity | ( | ) | const |
Get parent entity view.
| geom::Vec3 GetGeometricCenter | ( | ) | const |
Get entity's geometric center.
Returns the geometric center of the entity's bounding box by calculating (GetGeometricStart()+GetGeometricEnd())/2
| geom::Vec3 GetGeometricEnd | ( | ) | const |
| geom::Vec3 GetGeometricStart | ( | ) | const |
| ChainHandle GetHandle | ( | ) | const |
Get handle this view points to.
| Real GetMass | ( | ) | const |
Get entity's mass.
| ResidueView GetResidueByIndex | ( | int | index | ) | const |
get residue by index
returns an invalid residue handle if the index is out of bounds
| int GetResidueCount | ( | ) | const |
Get number of residues in this chain view.
| int GetResidueIndex | ( | const ResNum & | number | ) | const |
| const ResidueViewList& GetResidueList | ( | ) | const |
Get residues of this chain view.
| bool InSequence | ( | ) | const |
whether the residues form an ordered sequence with respect to their residue numbers.
| bool IsResidueIncluded | ( | const ResidueHandle & | handle | ) | const |
Check whether the view includes the given residue.
| bool operator!= | ( | const ChainView & | rhs | ) | const |
| bool operator== | ( | const ChainView & | rhs | ) | const |
| void RemoveResidue | ( | ResidueView | view | ) |
remove given residue from the view
| void RemoveResidues | ( | ) |
///
remove all residues from the view
| EntityView Select | ( | const String & | query_string, | |
| QueryFlags | flags = 0 | |||
| ) | const |
| EntityView Select | ( | const Query & | q, | |
| QueryFlags | flags = 0 | |||
| ) | const |
| const ChainViewDataPtr& ViewData | ( | ) | const [inline] |
| ChainViewDataPtr& ViewData | ( | ) | [inline] |
1.5.8