SequenceListImpl Class Reference

#include <sequence_list_impl.hh>

Public Types
typedef SequenceImplListConstIterator	ConstIterator
typedef SequenceImplListIterator	Iterator
Public Member Functions
	SequenceListImpl ()
void	AddSequence (const SequenceImplPtr &sequence)
int	GetCount () const
SequenceImplPtr &	GetSequence (int i)
const SequenceImplPtr &	GetSequence (unsigned int i) const
int	GetPos (int seq_index, int residue_index) const
int	GetResidueIndex (int seq_index, int pos) const
SequenceImplPtr	FindSequence (const String &name) const
String	ToString (int width=80) const
SequenceListImplPtr	Slice (int first, int n) const
int	GetMinLength () const
int	GetMaxLength () const
bool	SequencesHaveEqualLength () const
SequenceListImplPtr	Copy () const
Iterator	Begin ()
Iterator	End ()
ConstIterator	Begin () const
ConstIterator	End () const

---

Detailed Description

Definition at line 33 of file sequence_list_impl.hh.

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Member Typedef Documentation

typedef SequenceImplListConstIterator ConstIterator

Definition at line 35 of file sequence_list_impl.hh.

typedef SequenceImplListIterator Iterator

Definition at line 36 of file sequence_list_impl.hh.

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Constructor & Destructor Documentation

SequenceListImpl

(

)

[inline]

Definition at line 37 of file sequence_list_impl.hh.

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Member Function Documentation

void AddSequence

(

const SequenceImplPtr &

sequence

)

add sequence

ConstIterator Begin

(

)

const [inline]

Definition at line 85 of file sequence_list_impl.hh.

Iterator Begin

(

)

[inline]

Definition at line 83 of file sequence_list_impl.hh.

SequenceListImplPtr Copy

(

)

const

ConstIterator End

(

)

const [inline]

Definition at line 86 of file sequence_list_impl.hh.

Iterator End

(

)

[inline]

Definition at line 84 of file sequence_list_impl.hh.

SequenceImplPtr FindSequence

(

const String &

name

)

const

int GetCount

(

)

const [inline]

get number of sequences in list

Definition at line 42 of file sequence_list_impl.hh.

int GetMaxLength

(

)

const

int GetMinLength

(

)

const

int GetPos	(	int	seq_index,
		int	residue_index
	)			const

int GetResidueIndex	(	int	seq_index,
		int	pos
	)			const

const SequenceImplPtr& GetSequence

(

unsigned int

i

)

const [inline]

Definition at line 52 of file sequence_list_impl.hh.

SequenceImplPtr& GetSequence

(

int

i

)

[inline]

Definition at line 44 of file sequence_list_impl.hh.

bool SequencesHaveEqualLength

(

)

const [inline]

Definition at line 74 of file sequence_list_impl.hh.

SequenceListImplPtr Slice	(	int	first,
		int	n
	)			const

String ToString

(

int

width = 80

)

const

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The documentation for this class was generated from the following file:

• stage/include/ost/seq/impl/sequence_list_impl.hh