Sanitizer Class Reference

Structural cleanup. More...

#include <sanitizer.hh>

Inherits ost::mol::EntityVisitor.

Public Member Functions
	Sanitizer (const CompoundLibPtr &compound_lib)
virtual bool	VisitAtom (const mol::AtomHandle &atom)
virtual bool	VisitResidue (const mol::ResidueHandle &residue)
virtual bool	VisitChain (const mol::ChainHandle &chain)
virtual CompoundPtr	OnUnknownResidue (const mol::ResidueHandle &residue)
virtual void	OnUnknownAtom (const mol::AtomHandle &atom)
virtual void	OnMissingAtom (const mol::ResidueHandle &residue, const String &atom_name)

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Detailed Description

Structural cleanup.

Todo:

Sanitizer acts both as the checker and the instance responsible for cleaning up structural problems. Is this desired?

Definition at line 31 of file sanitizer.hh.

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Constructor & Destructor Documentation

Sanitizer

(

const CompoundLibPtr &

compound_lib

)

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Member Function Documentation

virtual void OnMissingAtom	(	const mol::ResidueHandle &	residue,
		const String &	atom_name
	)			[inline, virtual]

Definition at line 46 of file sanitizer.hh.

virtual void OnUnknownAtom

(

const mol::AtomHandle &

atom

)

[inline, virtual]

Definition at line 45 of file sanitizer.hh.

virtual CompoundPtr OnUnknownResidue

(

const mol::ResidueHandle &

residue

)

[inline, virtual]

Definition at line 41 of file sanitizer.hh.

virtual bool VisitAtom

(

const mol::AtomHandle &

a

)

[virtual]

Atom callback.

Reimplemented from EntityVisitor.

virtual bool VisitChain

(

const mol::ChainHandle &

c

)

[virtual]

Chain callback.

Reimplemented from EntityVisitor.

virtual bool VisitResidue

(

const mol::ResidueHandle &

r

)

[virtual]

Residue callback.

Reimplemented from EntityVisitor.

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The documentation for this class was generated from the following file:

• stage/include/ost/conop/sanitizer.hh