stage/include/ost/seq/alg/local_align.hh File Reference

#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>
#include <ost/seq/alg/alignment_opts.hh>
#include <ost/seq/alg/subst_weight_matrix.hh>

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Data Structures
struct	AlignedPatch
	holds the result of a local sequence alignment More...
Namespaces
namespace	ost
namespace	ost::seq
namespace	ost::seq::alg
Typedefs
typedef std::vector< AlignedPatch >	AlignedPatchList
Functions
AlignedPatchList DLLEXPORT_OST_SEQ_ALG	LocalSequenceAlign (const SequenceHandle &seq_a, const SequenceHandle &seq_b, const AlignmentOpts &opts)