HHSearchResult Class Reference

Public Member Functions
def	__init__
Data Fields
	pipe_separated
	hits

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Detailed Description

Read HHSearch result file. The result is stored in a list of hh search hits.

Usage:

result=HHSearchResult('output.hhr')
for hit in result.hits:
  print hit.pdb_id, hit.chain
  print hit.alignment.ToString(80)

Definition at line 25 of file hhsearch.py.

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Member Function Documentation

def __init__	(		self,
			filename,
			pipe_separated = False
	)

Definition at line 36 of file hhsearch.py.

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Field Documentation

hits

Definition at line 43 of file hhsearch.py.

pipe_separated

Definition at line 37 of file hhsearch.py.

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The documentation for this class was generated from the following file:

• stage/lib64/openstructure/ost/io/hhsearch.py