AminoAcidSet Class Reference

Amino acid bit set. More...

#include <amino_acids.hh>

Public Types
typedef AminoAcidSetIterator	Iterator
Public Member Functions
	AminoAcidSet ()
void	Add (AminoAcid amino_acid)
void	Remove (AminoAcid amino_acid)
bool	Contains (AminoAcid amino_acid) const
bool	Empty () const
Iterator	Begin () const
Iterator	End () const
bool	operator== (const AminoAcidSet &rhs) const
bool	operator!= (const AminoAcidSet &rhs) const
template<typename DS >
void	Serialize (DS &ds)
Static Public Member Functions
static AminoAcidSet	CreatePolarSet ()
static AminoAcidSet	CreateAromaticSet ()
static AminoAcidSet	CreateApolarSet ()
static AminoAcidSet	CreateSet (AminoAcid aa)
static std::vector< AminoAcidSet >	CreateCompleteSet ()
static std::vector< AminoAcidSet >	CreateThreeStateSet ()
static std::vector< AminoAcidSet >	CreatePseudoSet ()

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Detailed Description

Amino acid bit set.

Definition at line 92 of file amino_acids.hh.

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Member Typedef Documentation

typedef AminoAcidSetIterator Iterator

Definition at line 94 of file amino_acids.hh.

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Constructor & Destructor Documentation

AminoAcidSet

(

)

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Member Function Documentation

void Add

(

AminoAcid

amino_acid

)

add another amino acid

Iterator Begin

(

)

const

iterator pointing to the beginning of the amino acid set

 for (AminoAcidSet::iterator i=aa_set.Begin(), e=aa_set.End(); i!=e; ++i) {
   . . .
 }

will iterate over all the amino acids present in the set.

bool Contains

(

AminoAcid

amino_acid

)

const

whether the set contains a given amino acid

static AminoAcidSet CreateApolarSet

(

)

[static]

static AminoAcidSet CreateAromaticSet

(

)

[static]

static std::vector<AminoAcidSet> CreateCompleteSet

(

)

[static]

static AminoAcidSet CreatePolarSet

(

)

[static]

static std::vector<AminoAcidSet> CreatePseudoSet

(

)

[static]

static AminoAcidSet CreateSet

(

AminoAcid

aa

)

[static]

static std::vector<AminoAcidSet> CreateThreeStateSet

(

)

[static]

bool Empty

(

)

const

whether the set is empty

Iterator End

(

)

const

iterator pointing to the end of the amino acids.

bool operator!=

(

const AminoAcidSet &

rhs

)

const

bool operator==

(

const AminoAcidSet &

rhs

)

const

void Remove

(

AminoAcid

amino_acid

)

void Serialize

(

DS &

ds

)

[inline]

Definition at line 141 of file amino_acids.hh.

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The documentation for this class was generated from the following file:

• stage/include/ost/qa/amino_acids.hh