00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2010 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 #ifndef OST_IO_LOAD_ALIGNMENT_HH 00020 #define OST_IO_LOAD_ALIGNMENT_HH 00021 00022 /* 00023 Author: Marco Biasini 00024 */ 00025 00026 #include <ost/io/module_config.hh> 00027 #include <ost/seq/sequence_list.hh> 00028 #include <ost/seq/alignment_handle.hh> 00029 namespace ost { namespace io { 00030 00031 00032 seq::AlignmentHandle DLLEXPORT_OST_IO 00033 LoadAlignment(const String& file_name, const String& format="auto"); 00034 00035 seq::AlignmentHandle DLLEXPORT_OST_IO 00036 AlignmentFromStream(std::istream& stream, const String& format); 00037 00038 seq::AlignmentHandle DLLEXPORT_OST_IO 00039 AlignmentFromString(const String& data, const String& format); 00040 00041 00042 seq::SequenceList DLLEXPORT_OST_IO 00043 LoadSequenceList(const String& file_name, const String& format="auto"); 00044 00045 seq::SequenceList DLLEXPORT_OST_IO 00046 SequenceListFromStream(std::istream& stream, const String& format); 00047 00048 seq::SequenceList DLLEXPORT_OST_IO 00049 SequenceListFromString(const String& data, const String& format); 00050 00051 seq::SequenceHandle DLLEXPORT_OST_IO 00052 LoadSequence(const String& file_name, const String& format="auto"); 00053 00054 seq::SequenceHandle DLLEXPORT_OST_IO 00055 SequenceFromStream(std::istream& stream, const String& format); 00056 00057 seq::SequenceHandle DLLEXPORT_OST_IO 00058 SequenceFromString(const String& data, const String& format); 00059 00060 }} 00061 00062 #endif
1.5.8