| AdditionalSettingsWidget | |
| AlgorithmBase | Algorithm base class |
| AlignedColumn | Provides access to a column in a aligned region or a sequence alignment |
| AlignedColumnIterator | |
| AlignedCuboid | Axis-aligned cuboid |
| AlignedPatch | Holds the result of a local sequence alignment |
| AlignedRegion | Region in a sequence alignment |
| AlignmentContextMenu | |
| AlignmentHandle | Representation of a multiple sequence alignemnt consisting of two or more sequences |
| AlignmentOpts | Options for local and global sequence alignment algorithms |
| AlignmentViewObject | |
| AlignPropertiesPainter | |
| AllAtomPotential | |
| AllAtomPotentialOpts | Interaction statistics options |
| AminoAcidSet | Amino acid bit set |
| AminoAcidSetIterator | |
| AndOp | |
| AnisotropicFilter | |
| Argand | |
| AtomBase | Base class for AtomHandle and AtomView |
| AtomEntry | |
| AtomGroup | |
| AtomGroupEntry | |
| AtomHandle | Handle to atom datatype |
| AtomHandleIter | |
| AtomImpl | Atom implementation |
| AtomProp | |
| AtomSpec | |
| AtomView | Definition of AtomView |
| AtomViewIter | |
| AutoCorrelateFnc | |
| AutomaticTransition | |
| BackboneTrace | |
| BackgroundPainter | |
| BaseRemoteLoader | |
| BaseRow | |
| BaseViewObject | |
| BasicGradientColorOp | |
| binary_dispatch_ip< FNC > | In-place binary dispatch |
| binary_dispatch_op< FNC > | Out-of-place binary dispatch |
| BinaryDataSink | |
| BinaryDataSource | |
| BinaryIStream< CONVERSIONTYPE > | |
| BinaryOStream< CONVERSIONTYPE > | |
| Bitmap | |
| BlockStatusGuard | |
| BondEntry | |
| BondHandle | Chemical bond |
| BondSpec | |
| BondTable< ATOM > | |
| BondTableEntry< ATOM > | |
| BottomBar | Bottom Bar |
| Builder | Abstract builder interface |
| ButterworthHighPassFilter | Butterworth High Pass Filter |
| ButterworthLowPassFilter | Butterworth Low Pass Filter |
| ButtonBar | Button box |
| ButtonBox | Button box |
| ByChainColorOp | |
| ByChainColorOpWidget | |
| ByChainGetCol | |
| ByChainWidget | |
| ByElementColorOp | |
| ByElementColorOpWidget | |
| ByElementGetCol | |
| ByElementWidget | |
| Cartesian | |
| CartoonRenderer | Display entity in cartoon mode |
| CartoonRenderOptions | |
| CCP4 | |
| ChainBase | Base class for ChainHandle and ChainView |
| ChainHandle | Linear chain of residues |
| ChainHandleIter | |
| ChainImpl | |
| ChainView | Definition of ChainView |
| ChemClass | |
| Circle2 | |
| CircleDrawingStrategy | |
| CircleMask | |
| circular_iter< T > | |
| Classifier< impl::NullType > | |
| Classifier< int > | |
| Classifier< Real > | |
| ClassifierBase | Base class for classifiers |
| ClustalIOHandler | |
| Color | Color with red, green, blue and alpha component |
| ColorOp | |
| ColorOptionsWidget | |
| ColorSelectWidget | |
| ComboOptionsWidget | |
| complexint16 | |
| complexint32_t | |
| complexint8 | |
| CompositeMask | |
| Compound | Knows about the atoms and bonds of a chemical compounds |
| CompoundLib | |
| ConjFnc | |
| ConnectorImpl | |
| ConnectRendererBase | |
| ConnResEntry | |
| ConnResEntry::TorsionEntry | |
| Conopology | |
| ConservationPainter | |
| const_circular_iter< T > | |
| ConstData | Abstract base class for read-only data |
| ConstGenericPropContainer< H > | |
| ConstImageHandle | Read-only ImageHandle implementation |
| ConstModIPAlgorithm | In-place modification const algorithm |
| ConstModOPAlgorithm | Out-of-place modification const algorithm |
| ConstSequenceHandle | Immutable sequence |
| ConstSequenceList | List of immutable sequences |
| ContextMenu | |
| ContinuousClassifier | Classifier for real valued classes |
| Convert< CONVERSIONTYPE, VALUETYPE > | |
| CoordGroupHandle | Coordinate group, for trajectories and such |
| CoordSource | Coordinate source |
| CosFnc | |
| CPKRenderer | |
| CPKRenderOptions | |
| CPKWidget | |
| CRDReader | |
| CRDWriter | |
| CrossCorrelate | |
| CrosshairBaseDrawingStrategy | |
| CrosshairCircleDrawingStrategy | |
| CrosshairSquareDrawingStrategy | |
| Cuboid | Arbitrary oriented bounding cuboid |
| Cuboid | Rendered cuboid in 3D space |
| CuboidAxis | Cuboid axis defined by a normalized direction vector and a half extent |
| CurrentSelectionNode | |
| CustomPartNode | |
| CustomRenderer | |
| CustomRenderOptions | |
| CustomWidget | |
| CylinderPrim | |
| DAT | |
| Data | Abstract base class for data |
| Database | SQLite database handle |
| DatabaseError | |
| DataObserver | Abstract base class of data observer |
| DataViewer | Data viewer |
| DataViewerPanel | |
| DataViewerPanelBase | |
| Date | |
| DebugRenderer | |
| DFT | Computes Fourier Trasnform honoring the origin of the image |
| Dihedral | Low level dihedral implementation |
| DiscreteShrinkFnc | Shrink image by integral amount |
| DispatchException | |
| divide_dimensions< D1, D2 > | |
| DivideByZeroException | |
| DM3 | |
| DockWidget | |
| DrawOverlay | |
| DropBox | |
| DX | |
| EdgeDesc | |
| EditorBase | Base class for entity editors |
| EditPositionGuard | |
| EleImpl | |
| Ellipse2 | |
| EllipticPolar | |
| EmptyMode | |
| Entity | Graphical rendering of mol::EntityHandle entites |
| EntityBase | Definition of EntityBase |
| EntityHandle | Protein or molecule |
| EntityImpl | |
| EntityIOCRDHandler | |
| EntityIOHandler | Pure abstract base class for entity io handlers |
| EntityIOHandlerFactory< HANDLER > | |
| EntityIOHandlerFactoryBase | Pure abstract base class for creation of a specfic entity io handle |
| EntityIOMAEHandler | |
| EntityIOPDBHandler | |
| EntityIOSDFHandler | |
| EntityNode | |
| EntityObserver | |
| EntityPartNode | |
| EntityPropertyMapper | |
| EntityRenderer | |
| EntityView | Definition of EntityView |
| EntityViewColorOp | |
| EntityViewGetCol | |
| EntityViewVisitor | EntityViewVisitor interface |
| EntityVisitor | EntityVisitor interface |
| EnumOptBinder | |
| Error | |
| EventButton | Button box |
| ExpFnc | |
| ExplicitConvoluteFnc | |
| ExplicitCorrelateFnc | |
| Extent | Defines lower and upper valid indices |
| ExtentIterator | Extent iterator |
| ExtentMask | |
| FastaIOHandler | |
| FermiHighPassFilter | Fermi High Pass Filter |
| FermiLowPassFilter | Fermi Low Pass Filter |
| FFTException | |
| FFTFnc | |
| FFTPanel | |
| FileBrowser | Simplistic file browser |
| FileLoader | |
| FileNotFound | |
| FileTypeDialog | Dialog to select a file type |
| FileViewer | Simplistic file viewer |
| FixedString< LENGTH > | String class that uses an array of static size to hold the characters |
| FloatOptBinder | |
| fnc_add_ip< T1, D1, T2, D2 > | |
| fnc_div_ip< T1, D1, T2, D2 > | |
| fnc_mul_ip< T1, D1, T2, D2 > | |
| fnc_paste_ip< T1, D1, T2, D2 > | |
| fnc_sub_ip< T1, D1, T2, D2 > | |
| FormattedLine | |
| FractionalShift | |
| FragmentImpl | |
| FrequencyDomain | |
| Function | Base class that defines the function interface |
| FunctionImpl< T > | |
| GaussianFilterBase | Gaussian Filter |
| GaussianGradientMagnitudeFilterBase | First Derivative Gaussian Filter |
| GaussianHighPassFilter | Gaussian High Pass Filter |
| GaussianLaplacianFilterBase | Gaussian Filter |
| GaussianLowPassFilter | Gaussian Low Pass Filter |
| GDTResult | |
| GenericLoader | |
| GenericPropContainer< H > | Base class for the handler classes |
| GenericPropContainerImpl | Base class for the implementation |
| GenericPropError | |
| GenProp | Struct to store info about GenericProperties parsed from the |
| GeomException | |
| GfxNode | |
| GfxNodeVisitor | |
| GfxObj | Base class for all graphical rendering objects |
| GfxSceneNode | |
| GfxTestObj | |
| GfxView | |
| GLCanvas | |
| GLWin | |
| GLWinBase | |
| GostyApp | |
| GostyMainWindow | |
| Gradient | Color gradient |
| GradientColorOp | |
| GradientEdit | |
| GradientEditor | |
| GradientInfoHandler | |
| GradientLevelColorOp | |
| GradientLevelColorOpWidget | |
| GradientLevelGetCol | |
| GradientListModel | |
| GradientPresetWidget | |
| GradientPreview | |
| GradientStop | |
| Gutter | |
| GutterBlock | |
| HalfFrequencyDomain | |
| HBond | |
| HeuristicBuilder | |
| HHSearchHit | |
| HHSearchResult | |
| HighestPeakSearch3DBase | |
| HighPassFilter | High Pass Filter |
| Histogram< T1, T2, T3, T4, T5, T6, T7 > | Histogram specialization for multi classifier |
| HistogramBase | |
| HistogramError | |
| HistoryGuard | |
| HitSummary | |
| HSCWidget | |
| Hyperbola2 | |
| ICSEditor | Editor for internal molecule coordinates |
| If< false, T, F > | |
| If< true, T, F > | |
| IfNull< C, T, F > | |
| ImageFormatBase | |
| ImageHandle | Manage shared instances of images |
| ImageList | Manages a collection of images |
| ImageStateBase | |
| ImageStateConstModIPAlgorithm< FNC > | In-place modifying image state const visitor plus ip algorithm |
| ImageStateConstModIPVisitor< FNC > | In-place modifying image state visitor |
| ImageStateConstModIPVisitorBase | In-place modifying image state const visitor base class |
| ImageStateConstModOPAlgorithm< FNC > | Out-of-place modifying image state const visitor plus op algorithm |
| ImageStateConstModOPVisitor< FNC > | Out-of-place modifying image state visitor |
| ImageStateConstModOPVisitorBase | Out-of-place modifying image state const visitor base class |
| ImageStateImpl< T, D > | |
| ImageStateModIPAlgorithm< FNC > | In-place modifying image state visitor plus ip algorithm |
| ImageStateModIPVisitor< FNC > | In-place modifying image state visitor |
| ImageStateModIPVisitorBase | In-place modifying image state visitor base class |
| ImageStateModOPAlgorithm< FNC > | Out-of-place modifying image state visitor plus op algorithm |
| ImageStateModOPVisitor< FNC > | Out-of-place modifying image state visitor |
| ImageStateModOPVisitorBase | Out-of-place modifying image state visitor base class |
| ImageStateMorphAlgorithm< FNC > | Morph visitor plus ip algorithm |
| ImageStateMorphVisitor< FNC > | Morphing image state visitor |
| ImageStateMorphVisitorBase | Morphing image state visitor base class |
| ImageStateNonModAlgorithm< FNC > | Non-modifying image state visitor plus data algorithm |
| ImageStateNonModVisitor< FNC > | Non-modifying image state visitor |
| ImageStateNonModVisitorBase | Non-modifying image state visitor base class |
| ImmutableGradientInfoHandler | |
| ImmutableLoaderInfoHandler | |
| ImmutablePresetInfoHandler | |
| Index | |
| Index< 1 > | |
| Index< 2 > | |
| Index< 3 > | |
| Index< 4 > | |
| Index< 5 > | |
| Index< 6 > | |
| Index< 7 > | |
| IndexBase< D > | |
| IndexedVertexArray | |
| IndexedVertexArray::Entry | |
| IndexedVertexArray::NormalizerTriEntry | |
| IndexedVertexArray::NormalizerVertexEntry | |
| IndexFind< C, T, I > | |
| IndexFind< C, impl::NullType, I > | |
| IndexIterator< D > | |
| IndexIterator | |
| InfoConstVisitor | |
| InfoError | |
| InfoGroup | |
| InfoHandle | Main info handle |
| InfoImpl | |
| InfoItem | |
| InfoPanel | |
| InfoPanelLabel | |
| InfoPath | Encapsulates path to info groups and items |
| InfoSet | |
| InfoVisitor | |
| InitInspectorMenu | |
| InitMenuBar | |
| InMemCoordSource | In-memory coordinate source |
| InputEvent | |
| InsDel | Get insertions and deletions of an alignment |
| InspectorDialog | |
| InspectorWidget | |
| IntegralClassifier | Classifier for integral classes |
| IntegrityError | |
| InteractionStatistics | |
| IntOptBinder | |
| InvalidAlignment | |
| InvalidatedPointer | |
| InvalidExtentException | |
| InvalidHandle | Signals access of member functions of invalid handles |
| InvalidImageHandle | Exception thrown upon invalid image handle usage |
| InvalidImageStateVisitor | ImageStateVisitor general exception |
| InvalidObserver | |
| InvalidSampling | |
| InvalidSequence | |
| InvertedMask | |
| IOException | |
| IOFileAlreadyLoadedException | |
| IOManager | Central registry for input/output handlers |
| IOUnknownFormatException | |
| IsEqual< T1, T2 > | |
| IsEqual< T, T > | |
| IsosurfaceGenerator | |
| IsosurfaceGeneratorS | |
| IterRange< I > | Adaptor to turn iterator into an iterator range |
| JPK | |
| KeyEventTransition | |
| LabelNode | |
| LengthOf< T1, T2, T3, T4, T5, T6, T7 > | |
| LengthOf< NullType, NullType, NullType, NullType, NullType, NullType, NullType > | |
| LevelPreview | |
| Line2 | Line2 |
| Line3 | Line3 |
| LinearNormalizer | Linear normalization |
| LinearRangeNormalizer | |
| LineAverageBase | Computes mean value of columns or lines |
| LineIterator | Line iterator generator |
| LineRenderOptions | |
| LineSlice | |
| LineTraceRenderer | Render backbone trace of entity |
| LineTraceRenderOptions | |
| LineTraceWidget | |
| LoaderEditWidget | |
| LoaderInfoHandler | |
| LoaderListModel | |
| LoaderManager | |
| LoaderManagerWidget | |
| LocalSigmaThresholdBase | |
| Log10Fnc | |
| LogFnc | |
| Logger | |
| LogicOPNode | |
| LogNormalizer | Log normalization |
| LogRangeNormalizer | |
| LowPassFilter | Low Pass Filter |
| LPadded | |
| LPaddedFloat | |
| LPaddedInt | |
| MAEReader | |
| MainArea | Main window area It is implemented as a MDI (multi document interface). This allows you to add custom widgets to it |
| MainThreadRunner | |
| MainWindow | |
| Manipulator | Rigid body manipulator |
| MapHandleColorOp | |
| MapIODatHandler | |
| MapIODm3Handler | |
| MapIODxHandler | |
| MapIOHandler | |
| MapIOHandlerFactory< HANDLER > | |
| MapIOHandlerFactoryBase | |
| MapIOJpkHandler | |
| MapIOMrcHandler | |
| MapIONanoscopeHandler | |
| MapIOPngHandler | |
| MapIOSitusHandler | |
| MapIOSpiHandler | |
| MapIOTiffHandler | |
| MapIso | Isocontour rendering for 3D image data |
| MapLevelWidget | |
| MapOctree | Octree datastructure for 3D images |
| MapSlab | Render slice of 3d image |
| MapTool | |
| MaskBase | |
| MaskImageBase | |
| MaskOverlay | |
| MaskVisitor | |
| Mat2 | |
| Mat3 | |
| Mat4 | |
| Material | |
| Measurement | |
| MeasureTool | |
| Message | |
| MirrorFnc | |
| ModelRepository | |
| ModIPAlgorithm | In-place modification algorithm |
| ModOPAlgorithm | Out-of-place modification algorithm |
| MouseEvent | |
| MouseEventTransition | |
| MRC | |
| MultiClassifier< V, T1, T2, T3, T4, T5, T6, T7 > | Generic n-dimensional classifier |
| multiply_dimensions< D1, D2 > | |
| Nanoscope | |
| Node | |
| NodeEntry | |
| NodeListSubset | |
| NonModAlgorithm | Non-modifying Algorithm, abstract base class |
| NoOpNormalizer | |
| NormalizeFnc | Abstract normalizer base class |
| Normalizer | |
| NormalizerImpl | |
| NotConnectedError | Error to indicate that two atoms that are supposed to be connected are not |
| NullData | Null data singleton |
| NullFind< I > | |
| NullFunction | Null function |
| NullOverlay | |
| NullType | |
| NumberOfClasses< T > | |
| NumberOfClasses< impl::NullType > | |
| Observable< T > | Templated observable class |
| OcRangeVector | |
| OctreeIsocont | Isocontouring of maps using an octree-optimization |
| OctreeNode | |
| OffscreenBuffer | Offscreen management |
| OpBase | |
| OrOp | |
| OstCompleterBase | |
| OstDirModel | |
| OstMdiSubWindow | |
| OstOptionParser | |
| OstOptionParser | |
| OstTopWindow | |
| OutOfRangeException | |
| OutputRedirector | |
| Overlay | |
| OverlayCustomActCheckBox | |
| OverlayCustomLockCheckBox | |
| OverlayCustomVisCheckBox | |
| OverlayManager | |
| OverlayManagerGUI | |
| OverlayManagerObserver | Abstract observer base class for the OverlayManager |
| PackingPotential | Packing (solvent accessibility) potential |
| PackingPotentialOpts | |
| PackingStatistics | |
| Painter | |
| PairToTupleConverter< T1, T2 > | Helper to convert between python tuple and std::pair |
| PanelBar | Panel Bar which may contain other Widgets A PanelBar might have different ViewModes which are PanelWidgetContainer classes. Per default a PanelWidgetContainer has no ViewMode therefore first of all a view mode must be added. Otherwise nothing will be displayed. The ViewMode is responsible for how the widget is displayed. This class keeps only track about the order of the added widgets and the ViewModes |
| PanelBarWidgetHolder | |
| PanelManager | Class which organizes all widgets which are in the side panels This class handles all side bar widgets. It can be used to display, hide or move a widget to a PaneBar. There are three Bars (left, bottom, right) which are organized by this class. Whenever a widget is being removed or added it checks first if the widget type is known and if there are available instances |
| PanelWidgetContainer | A PanelWidgetContainer can display various widgets A PanelWidgetContainer is a abstract class which is used by the PanelBar class as view mode |
| PasteFnc | |
| PathCompleter | |
| PDB | Flags that incluence the behaviour of the PDBReader and PDBWriter |
| PDBReader | |
| PDBWriter | |
| Peak | |
| Perspective | |
| Phase | Manages phases og Complex numbers |
| PirIOHandler | |
| PixelSampling | Helper class to handle pixel sampling |
| Plane | |
| PlotAxisBase | |
| PlotAxisHorizontal | |
| PlotAxisVertical | |
| PlotData | |
| PlotDataBase | |
| PlotDataEntry | |
| PlotDataGraphicsItem | |
| PlotDataGraphicsItemBase | |
| PlotDataInfo | |
| PlotFunction | |
| PlotFunctionGraphicsItem | |
| PlotFunctionInfo | |
| PlotGraphicsCrossItem | |
| PlotGraphicsDiagonalCrossItem | |
| PlotGraphicsEllipseItem | |
| PlotGraphicsRectangleItem | |
| PlotGroup | |
| PlotGroupGraphicsItem | |
| PlotGroupInfo | |
| PlotInfoBase | |
| PlotLegendPanel | |
| PlotTickerBase | |
| PlotTickerLinear | |
| PlotViewer | |
| PlotViewerPanel | |
| PlotViewerProxy | |
| PNG | |
| PodVector< T > | Vector container that treats its data as POD - even if it isn't in the strict sense |
| Point | Class encapsulating 1D to 3D point |
| PointCloud | |
| PointCloudManager | |
| pointer_it< T > | |
| PointList | List of points |
| PointlistOverlay | |
| PointlistOverlayBase | |
| PointlistOverlayBaseSettings | |
| Polar | |
| Polygon2 | |
| PolygonMask | |
| PooledWidget | |
| PovState | |
| PowerSpectrumFnc | |
| PowFnc | |
| PrebuildSphereEntry | |
| PreparedStatement | |
| Preset | |
| PresetEditor | |
| PresetEditorListModel | |
| PresetInfoHandler | |
| PresetListModel | |
| PresetWidget | |
| Primitive | Base class for geometric primitives such as cuboids, and circles |
| PrimList | Rudimentary graphical lines rendering |
| Profile | |
| Progress | |
| PromodIOHandler | |
| Prop | |
| PropertyError | |
| PtrObserver< T > | |
| PythonCompleter | |
| PythonContext | |
| PythonContextParser | |
| PythonInterpreter | |
| PythonInterpreterWorker | |
| PythonShell | Interactive python shell |
| PythonShellTextDocumentLayout | |
| PythonShellWidget | |
| PythonSyntaxHighlighter | |
| PythonToken | |
| PythonTokenizer | |
| QMainWindow | |
| Quad | Simple rendered quad in 3D space |
| quantity< Dimensions > | |
| Quat | Unit quaternion |
| Query | Selection Query |
| QueryDialog | Dialog to enter query statement |
| QueryError | |
| QueryErrorDesc | |
| QueryFlag | Query flags |
| QueryImpl | Query statement implementation |
| QueryLexer | |
| QueryState | Holds state used during query evaluation |
| QueryToken | |
| QueryViewWrapper | |
| RandomizeFnc | |
| Range | |
| Range | |
| RangeHandler | |
| RasterImage | Generic raster image |
| RasterImage::Pixel | Single pixel spec |
| Rectangle2 | |
| RefMode | |
| RemoteLoader | Remote file loader |
| RemoteSiteLoader | |
| RenderModeNode | |
| RenderModesNode | |
| RenderModeWidget | |
| RenderOp | |
| RenderOptions | |
| RenderOptionsWidget | |
| RenderOpWidget | |
| ResidueBase | Base class for ResidueHandle and ResidueView |
| ResidueHandle | Residue handle |
| ResidueHandleIter | |
| ResidueImpl | |
| ResidueProp | Residue properties |
| ResidueView | Residue view |
| ResidueViewIter | |
| ResNum | |
| RingFinder | Class for finding rings in an entity |
| RootNode | |
| Rotate2D | Rotate in XY plane |
| Rotate2D90 | Rotate 90 degree CW in XY plane |
| Rotation3 | |
| RowSet< R > | Row set iterator |
| RPadded | |
| RuleBasedBuilder | Use library of chemical compounds to derive bonds and clean-up structural problems |
| Sanitizer | Structural cleanup |
| Scalar | |
| Scale | Apply scale |
| Scene | Main class for organization and root for the graphical display |
| SceneMenu | |
| SceneNode | |
| SceneObserver | Interface for observing graphical objects |
| SceneObserverImpl | |
| SceneSelection | |
| SceneWin | |
| SceneWinModel | Data model for scene win |
| SDFReader | |
| SDFWriter | |
| SecStrRow | |
| SecStructure | Secondary structure types as defined by DSSP. For convenience, the enum values match the characters used in the DSP file format |
| SecStructureSegment | Consecutive secondary structure element |
| Selection | |
| SelectionTool | |
| SelectRefDialog | |
| SelHelper | |
| SelItem | |
| SelNode | |
| SelStmt | |
| SeqSearchBar | Search bar to search in multiple sequence alignment |
| SeqSecStrPainter | |
| SeqSelectionPainter | |
| SeqTextPainter | |
| SequenceDelegate | |
| SequenceHandle | Mutable sequence handle |
| SequenceImpl | |
| SequenceIOHandler | Pure abstract base class for entity io handlers |
| SequenceIOHandlerFactory< HANDLER > | |
| SequenceIOHandlerFactoryBase | Pure abstract base class for creation of a specfic alignment io handler |
| SequenceList | List of sequences |
| SequenceListImpl | |
| SequenceListIterator< T, I > | |
| SequenceModel | |
| SequenceRow | |
| SequenceTableView | QTableView with first column not moving |
| SequenceViewer | QTableView with first column not moving |
| SequenceViewObject | |
| SerializeHelper< false, T > | |
| SerializeHelper< true, T > | |
| SerializeWriteHelper< false, T > | |
| SerializeWriteHelper< true, T > | |
| ShellHistory | |
| ShiftFnc | |
| ShowResultDialog | |
| SideBar | Bottom Bar |
| SignalTransition | |
| SimpleRenderer | Simple line-based rendererer at full connectivity detail |
| SimpleRenderOptions | |
| SimpleWidget | |
| SinFnc | |
| Situs | |
| Size | Class encapsulating 1D to 3D size |
| SliceFnc | |
| SlineRenderer | |
| SlineRenderOptions | |
| SlineWidget | |
| SmoothMaskImageBase | |
| SpacenavControl | |
| SpatialDomain | |
| SpatialOrganizer< ITEM, VEC > | Spatial organizer |
| Sphere | |
| SpherePrim | |
| SphericalMask | |
| Spider | |
| Spline | |
| SplineEntry | |
| SplitterPanelBar | Bottom Bar |
| SpnavInput | |
| SqrtFnc | |
| SquareDrawingStrategy | |
| StarDataItem | |
| StarLoopDesc | |
| StarParser | Parser for the STAR file format |
| StatBase | |
| State | |
| StateMachine | |
| StatMinMaxBase | |
| std::iterator | |
| Stop | |
| StringRef | Convenient datatype for referencing character data |
| SubstWeightMatrix | Position-independet substitution weight matrix |
| SuperposerSVD | Effiently superpose a bunch of models with the same number of atoms Choose either two EntityViews or two AtomViewLists |
| SuperpositionResult | Stores the number of cycles and the two final EntityViews (in case IterativeSuperposition was applied), the root mean square deviation of the two superposed objects and the transformation matrix (geom::Mat4) to superpose input1 onto input2 |
| Surface | |
| SurfaceHandle | |
| SurfaceImpl | |
| SurfaceIOHandler | |
| SurfaceIOHandlerFactory< HANDLER > | |
| SurfaceIOHandlerFactoryBase | |
| SurfaceIOMSMSHandler | |
| SurfaceTri | |
| SurfaceVertex | |
| SymbolDrawingStrategy | |
| SymmetryNode | Renders all child nodes and the symmetry related copies |
| SymmetryOp | |
| TabbedPanelBar | Tabbed bottom Bar |
| TanFnc | |
| TempDirWithFiles | |
| TextLogger | |
| TextPrim | |
| ThinSplitter | Splitter with 1 pixel wide handles |
| TickPainter | |
| TIF | |
| tiff_warning_handler_wrapper | |
| TitleRow | |
| TMAlignResult | |
| TMScoreResult | |
| Tool | Base class for tools |
| ToolBar | |
| ToolBarOptionsWidget | |
| ToolManager | |
| ToolOption | |
| ToolOptionEnum | |
| ToolOptionEnum::Tuple | |
| ToolOptionGroup | |
| ToolOptionNum< T, C > | |
| ToolOptions | Tool options |
| ToolOptionsWidget | |
| ToolOptionsWin | |
| TorsionHandle | Named torsion (dihedral) angle |
| TorsionImpl | |
| TorsionPotential | Torsion potential |
| TorsionPotentialOpts | Torsion potential options |
| TorsionPotentialOptsSolis | Torsion potential options |
| TorsionPotentialSolis | Torsion potential |
| TorsionStatistics | Sequence dependent torsion statistics |
| TorsionStatisticsSolis | Sequence dependent torsion statistics |
| TraceProfileEntry | |
| TraceRenderer | Render backbone trace of entity |
| TraceRendererBase | |
| TraceRenderOptions | |
| TraceSubset | Subset of the trace |
| TraceWidget | |
| Transform | Basic and essential transformation class, including translation, rotation and center of rotation |
| Transformation | Transformation base class |
| TransformFnc | |
| TransitionBase | |
| TransitionGuard | |
| Translate | Apply translation |
| TransmissionToODNormalizer | |
| TriMatrix< T > | Triangular matrix template |
| TubeWidget | |
| unary_dispatch_ip< FNC > | In-place unary dispatch |
| unary_dispatch_op< FNC > | Out-of-place unary dispatch |
| UndefinedImageFormat | |
| UniformColorOp | |
| UniformColorOpWidget | |
| UniformColorWidget | |
| UniformGetCol | |
| Units | |
| ValueHolder< V > | |
| Vec2 | |
| Vec3 | Three dimensional vector class, using Real precision |
| Vec4 | |
| VectorAdditions< Container > | |
| VerboseInfoVisitor | |
| ViewAddFlag | Flags to control the behaviour when adding handles to views |
| ViewerNormalizer | |
| Viewport | |
| VisibilityOp | |
| VisibilityOpWidget | |
| Widget | Base class for widgets |
| WidgetFactory | |
| WidgetGeomHandler | |
| WidgetPool | This Widget pool manages instances of widgets Widgets can be added to this pool by simply passing the classname and the amount of available instances. This class is coupled to the WidgetRegistry |
| WidgetRegistry | Central registry for widgets |
| WidgetState | |
| WidgetStateSaver< BASE, T1, T2, T3 > | |
| WidgetStateSaver< BASE > | |
| WidgetStateSaver< BASE, T1 > | |
| WidgetStateSaver< BASE, T1, T2 > | |
| WidgetStateSaverConfig | |
| WireframeWidget | |
| WithinParam | |
| XCSEditor | External coordinate system editor |
| XorOp | |
